PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_12400V3.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 412aa    MW: 42872.3 Da    PI: 8.8576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_12400V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.5e-123963327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C+++++tGtCk+G++Ck++H++
  Pp3c26_12400V3.3.p 39 QPECQYYLKTGTCKFGATCKYHHPR 63
                        799********************96 PP

2zf-CCCH39.68.5e-1385109327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG CkyG +CkF+H++
  Pp3c26_12400V3.3.p  85 EKECAYYMRTGSCKYGVTCKFHHPQ 109
                         689********************97 PP

3zf-CCCH37.25e-12241266227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +C+++H++
  Pp3c26_12400V3.3.p 241 GQPECQYYMKTGECKFGTTCRYHHPK 266
                         5799********************96 PP

4zf-CCCH34.63.3e-11287311226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         + ++C+f+ r+G+Ck+G++CkF H+
  Pp3c26_12400V3.3.p 287 GNPPCSFYTRYGICKFGPTCKFDHP 311
                         669*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-53663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3853664IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-93963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-44264IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-582109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.69582110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-683110IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1085109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-588108IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906239267IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9242266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6243267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4245265IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047285313IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8289311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5289311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MWKGLWGLGV IGGFNHPANR KLGAVVARGK GEYPERVGQP ECQYYLKTGT CKFGATCKYH  60
HPREKAGSTG RVLLNVLGLP LRLGEKECAY YMRTGSCKYG VTCKFHHPQP ATVGGMVPVP  120
FGSGGGPSSP APQGYAAGAL PSWPLARSPY PLPRLQTHSS YGPMLPLQQG IMSMPGWSYQ  180
GPVGPADGHQ QGYVFGGAPQ GEHVSGFGPY MQGSSAVGLP AHQATQSVVG QKESLFPERL  240
GQPECQYYMK TGECKFGTTC RYHHPKDRST PSSTCHLSAM GLPLRPGNPP CSFYTRYGIC  300
KFGPTCKFDH PLVGSLTYSP SAGSLADVPV APYPIGSSPM NLAPSAYSEG LLERQGSGEA  360
GGYAEDGIGH HVTSRSNSEG GGVSSGSGVN GGVGGAGSGS GPTQAESVGK S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.97730.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001768387.10.0predicted protein, partial
SwissprotQ9SWF91e-111ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ2R4J41e-111C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA9SQ000.0A9SQ00_PHYPA; Predicted protein (Fragment)
STRINGPP1S6_324V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-89C3H family protein